Golden, savory, and full of protein-packed goodness, Ham and Cheese Egg Cups are the ultimate solution for busy mornings or grab-and-go brunches. These adorable little breakfast bites are made by layering slices of ham into a muffin tin, adding shredded cheese, and cracking an egg on top before baking to perfection. The result? A crispy ham “cup” holding a warm, cheesy, and sunny egg center.

Whether you’re planning a weekend brunch or need a batch-prep breakfast idea for the week, these egg cups deliver flavor, convenience, and nutrition all in one. They’re low-carb, gluten-free, and can be easily customized with your favorite add-ins like spinach, peppers, or herbs. Plus, they look as good as they taste — which is always a win.
Why You’ll Love This Ham and Cheese Egg Cups Recipe
- Effortless and Fast: Minimal prep and a quick bake time mean you can have breakfast ready in under 30 minutes.
- Versatile: Customize with different cheeses, vegetables, or even herbs.
- Great for Meal Prep: These keep well in the fridge and are easy to reheat on busy mornings.
- Kid-Friendly: With their fun muffin shape and savory flavor, these are a hit with kids and adults alike.
- Healthy and Satisfying: Packed with protein and free of unnecessary carbs — perfect for low-carb or keto diets.
Preparation Phase & Tools to Use (Essential Tools and Their Importance)
Before diving into the cooking process, a quick and organized prep makes all the difference. Here’s what you’ll need and why each tool matters:
- Muffin Tin (12-cup): This is the key vessel for shaping your egg cups. Opt for a non-stick version or line it with silicone cups to ensure easy release.
- Non-Stick Spray or Oil Brush: Essential to lightly grease the muffin tin and prevent sticking, especially around the edges where the cheese might crisp.
- Mixing Bowl (Optional): If you’re scrambling the eggs or pre-mixing them with veggies or cheese, a bowl comes in handy.
- Spoon or Small Ladle: For adding shredded cheese or optional ingredients evenly into each cup.
- Knife and Cutting Board: In case you want to chop up herbs, vegetables, or pre-cut the ham for better fit.
- Oven Mitts: A must for safely removing your hot muffin tin from the oven.
Each of these items ensures your egg cups are uniform, easy to remove, and cooked to perfection without mess or fuss.
Preparation Tips
- Choose the Right Ham: Use round deli-style slices that fit nicely into the muffin tin. Thin slices crisp better while thicker ones hold shape more firmly.
- Crack Eggs Separately: To avoid shell pieces or broken yolks, crack each egg into a small bowl before adding to the cups.
- Cheese First or Last?: For a melty base, add cheese before the egg. For a golden top, sprinkle it over the egg.
- Don’t Overfill: Eggs expand slightly while baking. Leave a little room at the top of each cup.
- Add Veggies Sparingly: If using watery vegetables like tomatoes or spinach, pat them dry first to avoid sogginess.
- Bake on a Middle Rack: This promotes even cooking without over-browning the edges.
Ingredients for This Ham and Cheese Egg Cups Recipe
You don’t need a long list of ingredients to create something delicious. These egg cups come together with a handful of everyday items:
- 12 slices of deli ham (thin to medium thickness works best; round cuts fit perfectly in muffin tins)
- 12 large eggs (fresh and room temperature for best results)
- 1 cup shredded cheddar cheese (or your favorite cheese blend – mozzarella, Swiss, or pepper jack all work well)
- Salt and black pepper to taste
- Chopped green onions or chives (optional, for garnish and extra flavor)
- Cooking spray or a touch of oil (to grease the muffin tin)
Optional Add-ins:
- Diced bell peppers or onions (¼ cup, finely chopped)
- Spinach leaves (a few torn pieces per cup)
- Cooked bacon or sausage crumbles (for extra protein)
- Hot sauce or chili flakes (if you like a little kick)
These ingredients make 12 servings — perfect for family breakfasts or meal prepping for the week.

Step-by-Step Instructions for Making Ham and Cheese Egg Cups
These easy steps will guide you through the process to create perfectly baked, savory ham and cheese egg cups.
Step 1: Preheat Your Oven
Preheat your oven to 375°F (190°C). This ensures an even bake and gives your oven time to reach the right temperature while you prep.
Step 2: Prepare the Muffin Tin
Lightly grease a 12-cup muffin tin with non-stick spray or a small amount of oil using a brush or paper towel. This prevents sticking, especially where the cheese meets the pan.
Step 3: Add the Ham Slices
Line each muffin cup with a slice of ham, gently pressing it down to form a cup shape. Let the edges fold or ruffle up the sides — this gives a nice texture once baked.
Step 4: Add Cheese and Optional Fillings
Sprinkle about 1 tablespoon of shredded cheese into each ham cup. If you’re using any optional veggies or cooked meats, add a small spoonful here as well.
Step 5: Crack in the Eggs
Carefully crack one egg into each ham-lined cup. For perfect presentation and yolk control, you can first crack each egg into a small bowl, then pour it into the ham cup.
Step 6: Season
Sprinkle a pinch of salt and pepper over each egg. Add other seasonings or herbs to taste (e.g., garlic powder, smoked paprika, or Italian herbs).
Step 7: Bake
Place the muffin tin on the middle rack of your oven and bake for 15–18 minutes. For soft yolks, aim for 15 minutes. For firmer, fully set yolks, go closer to 18 minutes.
Step 8: Garnish and Serve
Remove the egg cups from the oven and allow them to cool for 2–3 minutes. Gently lift them from the tin using a spoon. Top with chopped green onions or chives, if desired, and serve warm.
Notes
- Customize Freely: These egg cups are endlessly versatile. Swap in different cheeses (like goat cheese or feta), meats (turkey, prosciutto), or veggies (zucchini, mushrooms) to keep things interesting.
- Low-Carb and Keto-Friendly: Perfect for those following low-carb diets — just avoid high-sugar additions like ketchup or sweetened sauces.
- Great for Meal Prep: These can be made ahead and stored in the fridge for up to 5 days. Reheat in the microwave for about 30 seconds for a quick, nutritious breakfast.
- Kid-Approved: The individual portion size and savory flavor make them a favorite for kids, especially if you let them help choose or add ingredients.
- Freeze for Later: Once cooled completely, wrap individually in plastic wrap and freeze. Reheat directly from frozen at 350°F (175°C) for 10–12 minutes in the oven.
Watch Out for These Mistakes While Cooking
- Using Too Much Egg White: If you’re using very large or jumbo eggs, the whites may overflow. Consider using medium eggs or slightly pouring off excess white before adding.
- Skipping the Grease: Even with ham lining, a lightly greased pan is essential. Cheese can stick and make cleanup a nightmare otherwise.
- Underbaking or Overbaking: Keep a close eye on them around the 15-minute mark. Overbaked egg cups will turn rubbery; underbaked ones may be too runny.
- Ham Doesn’t Fit: If your ham slices are too small or oddly shaped, you might need to overlap or use two slices to get a proper “cup” that holds everything in.
- Not Letting Them Cool Before Removing: They’ll hold together better if you let them rest for 2–3 minutes in the pan before lifting them out.
- Using Wet Veggies: Ingredients like spinach or tomatoes should be patted dry to prevent sogginess at the base of the cups.
- Crowding Ingredients: Too many fillings can cause overflow. Stick to small amounts of add-ins per cup.
- Skipping the Taste Test: Don’t forget to taste and adjust seasoning to your preference — especially when using milder cheeses.
What to Serve With Ham and Cheese Egg Cups?
These egg cups are satisfying on their own, but pairing them with complementary sides can elevate your breakfast or brunch spread. Whether you’re planning a laid-back weekend meal or a special occasion buffet, here are some tasty additions:
8 Recommendations
- Fresh Fruit Salad
A bright medley of berries, melon, and citrus balances the savory richness of the egg cups with refreshing sweetness. - Avocado Slices or Guacamole
Creamy and full of healthy fats, avocado pairs perfectly with the saltiness of ham and adds a vibrant green touch to your plate. - Whole Grain Toast or English Muffins
Add a bit of crunch and a platform for spreading butter, jam, or even dipping into runny yolks. - Breakfast Potatoes or Hash Browns
Crispy skillet potatoes or classic hash browns add a comforting, hearty side that makes the meal feel more complete. - Greek Yogurt Parfait
Layered with granola and fruit, a parfait adds protein and a bit of indulgent texture contrast. - Roasted Asparagus or Cherry Tomatoes
These light, oven-roasted veggies bring color and depth while keeping things healthy and fresh. - Mini Pancakes or Waffles
For a sweet touch, add mini stacks of pancakes or waffles with syrup or honey on the side. - Green Smoothie or Fresh Juice
A smoothie made with spinach, banana, and a bit of almond milk or a fresh citrus juice rounds out the meal with nutrients and natural sweetness.
Storage Instructions
One of the best things about Ham and Cheese Egg Cups is how well they store — making them ideal for weekly meal prep or batch cooking. Here’s how to keep them fresh and delicious:
- Refrigerator: Let the egg cups cool completely after baking. Store them in an airtight container and refrigerate for up to 5 days. To reheat, microwave on high for 25–30 seconds.
- Freezer: Wrap each egg cup individually in plastic wrap or foil, then place them in a zip-top freezer bag. Freeze for up to 2 months. Reheat directly from frozen in the microwave (45–60 seconds) or oven at 350°F (175°C) for 10–12 minutes until heated through.
- Avoid Storing with Moist Items: To keep the ham crispy and prevent sogginess, avoid storing the egg cups next to watery foods like fresh fruit.
Estimated Nutrition (Per 1 Egg Cup)
Please note that these values are approximate and can vary depending on the brand and exact quantity of ingredients used.
- Calories: 140
- Protein: 11g
- Total Fat: 9g
- Saturated Fat: 3.5g
- Cholesterol: 185mg
- Carbohydrates: 1g
- Fiber: 0g
- Sugar: <1g
- Sodium: 380mg
This makes them a great option for low-carb, high-protein, and keto-friendly meal plans — while still being satisfying and flavorful.
Frequently Asked Questions
1. Can I make ham and cheese egg cups ahead of time?
Absolutely! These egg cups are perfect for meal prep. You can make them up to 5 days in advance and store them in the refrigerator, or freeze them for longer storage.
2. Do I have to use ham?
Not at all. You can use turkey, prosciutto, or even vegetarian alternatives like large spinach leaves or a tortilla round as the “cup” base.
3. Can I scramble the eggs instead of using whole ones?
Yes! Simply whisk the eggs in a bowl and pour the mixture into each ham-lined muffin cup. This gives you more of a mini frittata style and allows you to mix in fillings evenly.
4. Why are my egg cups watery at the bottom?
This often happens if you’re using vegetables with high water content, like tomatoes or spinach, without drying them properly. Pat them with a paper towel before adding.
5. Can I use egg whites instead of whole eggs?
Yes, egg whites work great. You can use about ¼ cup of egg whites per muffin cup. This option reduces cholesterol and fat for a lighter bite.
6. What’s the best way to reheat them?
Microwave them for about 30 seconds if refrigerated, or 45–60 seconds if frozen. You can also reheat them in the oven at 350°F (175°C) for 8–10 minutes for a crispier texture.
7. Can kids eat these?
Definitely. They’re the perfect size for little hands and can be made milder or jazzed up with kid-friendly veggies and cheese.
8. Can I add milk or cream to the eggs?
You can if you scramble the eggs first. A tablespoon of milk or cream per 2 eggs can make the texture softer and more custardy.
Conclusion
Ham and Cheese Egg Cups are your go-to solution for a breakfast that’s fast, flavorful, and easy to take on the move. Whether you’re following a low-carb diet, looking for new brunch ideas, or just want a protein-packed morning option, these egg cups check all the boxes. With endless customization options and a short prep time, they’ll quickly become a staple in your weekly meal rotation.
From busy weekday mornings to elegant weekend brunch spreads, these savory, cheesy bites are here to make breakfast something you actually look forward to.

Ham and Cheese Egg Cups
- Total Time: 25 minutes
- Yield: 12 egg cups 1x
Description
Jumpstart your day with these Ham and Cheese Egg Cups — a quick breakfast recipe that’s equal parts delicious and convenient. Perfect for easy dinner ideas, healthy snacks, or grab-and-go breakfast ideas, these egg cups deliver on flavor, nutrition, and style. Made with slices of ham, gooey cheese, and protein-rich eggs, each bite is warm, savory, and satisfying. Whether you’re prepping for the week or serving brunch guests, this easy recipe is a no-fuss, low-carb delight. These cups not only look beautiful on a plate but are also packed with energy-boosting ingredients that will keep you full and happy.
Ingredients
- 12 slices of deli ham (thin to medium thickness)
- 12 large eggs
- 1 cup shredded cheddar cheese (or any preferred cheese)
- Salt and pepper to taste
- Optional: chopped green onions or chives for garnish
- Optional Add-ins: diced veggies, cooked bacon, spinach
- Non-stick spray or oil (for greasing muffin tin)
Instructions
- Preheat oven to 375°F (190°C).
- Lightly grease a 12-cup muffin tin with spray or oil.
- Line each muffin cup with one slice of ham, pressing it to form a cup.
- Add about 1 tablespoon of shredded cheese into each ham cup.
- Add optional fillings like chopped veggies or bacon if desired.
- Crack one egg into each ham cup (or pour in whisked egg if preferred).
- Season with salt and pepper.
- Bake for 15–18 minutes, depending on how runny or firm you like your yolks.
- Let cool for 2–3 minutes, then gently lift out with a spoon.
- Garnish with green onions or chives and serve warm.
- Prep Time: 10 minutes
- Cook Time: 15 minutes